PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf00152g20002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family ARF
Protein Properties Length: 733aa    MW: 81002.6 Da    PI: 6.3347
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf00152g20002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B378.47.5e-25146247199
                               EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                               f+k+lt sd++++g +++p++ ae+       ++++++ ++l+++d++ ++W++++iyr++++r++lt+GW+ Fv a++L++gD+
  Niben101Scf00152g20002.1 146 FCKTLTASDTSTHGGFSVPRRAAEKLfppldySMQPPT-QELVVRDLHDNTWTFRHIYRGQPKRHLLTTGWSMFVGAKRLRAGDS 229
                               99*********************999*****9555554.49******************************************** PP

                               EEEEE-SSSEE..EEEEE-S CS
                        B3  80 vvFkldgrsefelvvkvfrk 99 
                               v+F   ++++ +l+++v+r+
  Niben101Scf00152g20002.1 230 VLFI--RDEKSQLMLGVRRA 247
                               ****..4567778***9997 PP

2Auxin_resp118.84.3e-39272355183
                Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                               aahaa+++s+F+++YnPra++seFv++++k++k+++ +++svGmRf m+fete+s +rr++Gt+vg+sdldp+rWp+SkWr+L+
  Niben101Scf00152g20002.1 272 AAHAAANRSTFTIFYNPRACPSEFVIPLAKYRKSVYgTQLSVGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRCLQ 355
                               79**********************************9**********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.44E-47133275IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.7E-42139260IPR015300DNA-binding pseudobarrel domain
CDDcd100172.57E-23145246No hitNo description
PfamPF023622.0E-22146247IPR003340B3 DNA binding domain
PROSITE profilePS5086313.267146248IPR003340B3 DNA binding domain
SMARTSM010197.0E-25146248IPR003340B3 DNA binding domain
PfamPF065075.4E-34272355IPR010525Auxin response factor
PROSITE profilePS5174521.39620704IPR000270PB1 domain
PfamPF023092.4E-8631706IPR033389AUX/IAA domain
SuperFamilySSF542779.16E-9635699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 733 aa     Download sequence    Send to blast
MGSVEEKHKP GSLVSGAHTL LEEMKLLKEM QDHSGGGKLI NSELWHACAG PLVTLPQVGS  60
LVYYFPQGHS EQVAVSTNRT ATSQIPNYPN LASQLLCQVH NVTLHADKET DEIYAQMSLQ  120
PVNSERDVFP IPDFGLKPSK HPTEFFCKTL TASDTSTHGG FSVPRRAAEK LFPPLDYSMQ  180
PPTQELVVRD LHDNTWTFRH IYRGQPKRHL LTTGWSMFVG AKRLRAGDSV LFIRDEKSQL  240
MLGVRRANRQ QTSLPSSVLS ADSMHIGVLA AAAHAAANRS TFTIFYNPRA CPSEFVIPLA  300
KYRKSVYGTQ LSVGMRFGMM FETEESGKRR YMGTIVGISD LDPLRWPGSK WRCLQAEWDE  360
PGCGDKQSRV SPWEVETPES LFIFPSLTAG LKRPYQSSFL GGQTEWDSLM HRPFMRVPEN  420
VYGELQSSSI SNLWSEQLMK MLARPPGVTG LQWGVPTVQD IKVALPQESR NLIHAAGNQK  480
PELSTVEDTS VQSERNPLVI LNQPCVVNSI SSSQATLQPK SQPPEKVGSD TVGISTEPAK  540
ETSVSVDRLD QCPSLGQCSE EKVTIKPASP LILPTDATAS HQNSLSQLQS SPWRQIESAS  600
ANNILQGSNN NEWNLPSFQS TAGLIQKAGS VGRSIDVSSF KTYHELRSEI ERMFGLEGLL  660
NDTKGSGWKL VYVDYENDVL LVGDDPWEEF VGCVRCIRIL SPTEVQQMGE EGMQLLNSAG  720
LQGINGSTSE FPN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A0.013805392Auxin response factor 5
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016465084.10.0PREDICTED: auxin response factor 5-like
RefseqXP_016465083.10.0PREDICTED: auxin response factor 5-like
SwissprotP930240.0ARFE_ARATH; Auxin response factor 5
TrEMBLK4BVK30.0K4BVK3_SOLLC; Auxin response factor
STRINGSolyc04g081240.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58592334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein